I have used a good number of different DSLRs for IR over the years. Among the Nikon range D1, D1H, D2H, D2X, D3, D600, D40, D40x, D200, D300, D5200, and D5300. Plus of course Fuji (S3Pro) and Panasonic (GF-1, G-2, GH-2).
For many years I relied on the D200 as my main IR work horse, and in fact still have one of them floating around, but it is no longer used as I now find the dynamic range a little restricted. My current IR camera is a Nikon D5300 and my backup is D40X, both with internal filters of the R72 class. The D5300 is of course CMOS and while it might lack the IR 'punch' of the D200, it certainly resolves better and has a better signal:noise ratio. It also natively support GPS, which is important for my use (do note you really need to upload an aGPS helper file to this camera otherwise it struggles way too much finding a satellite fix). The D200 also supports GPS, but only by adding a GPS device as an accessory.
I think a D5300 is about a good as it gets in the IR world these day, but undoubtedly, a D200 is a cheaper point of entry for DIY. Don't overlook the charms and capabilities of a D40X though, if you can live without GPS support.