Microcontrast is MTF50, nothing more and nothing less. I'm guessing the source would be a rather popular youtube guy who also likes to talk about magnetic fields.
The talk about "better rendering" from low element count lenses is purely subjective. Each lens would have different rendering depending on the optical formula, more or less lens elements won't affect that "3D pop" or whatever it's supposed to mean. Is it scientifically quantifiable? If so, please show me. (I'm being nice here, I usually call this notion... and refer to this as the cult of contrast).
I'll go so far as to say the so called "3D pop" is due to field curvature, ie low element count lenses are
generally less corrected, unflat, therefore the image seems to bounce out. A person who owns many lens design patents, who's also behind a popular lens company does agree with me, so there's that. He also claims the "low element count colours" or referred to as 德味 (German taste) can be easily mimicked with lens coatings. So the notion of "low elements produce more vibrant colours" is also a product of premature coatings altering the true colours. He's a bit secret with his real identity, so I will respect it. If I did post a name though, expect to find some of his patents on Japanese sites for various big companies.
Whether you like the vibrant colours or want them realistic and flat, whether you like field curvature causing images to pop or you want a better and more corrected lens, all is valid. Just buy whatever you like.
Which one pops more?
This is a controlled test by the way, both lenses have low element count.
The first comes from the Printing-Nikkor 105mm F/2.8A at F3.3 and 1x.
The second comes from the Schneider Xenon-Sapphire 3.9/95-0001 at 1x, this lens is optimised for 0.23x, so pushing it to 1x mounted forward is using it out of spec. As a product of that however, more field curvature is brought in, resulting in corner fuzziness and therefore the centre "apparently" pops out. That's just my perception.
Back to your question, I don't think Nikon ever hand ground their lenses. If they did, I don't know about it. They however used to hand polish lenses, the legendary 28mm F1.4D and 20-35mm F2.8D feature hand polished aspherical elements.