It's not like Nikon just buys a Sony sensor and sprays magic DR dust on it. Likely it involves redesigned electronics on the sensor and years of development to achieve something like the D810. Whether the same technology works for a BSI sensor, how can we know? If it were easy, every manufacturer would be matching D810 dynamic range at base ISO.
I would prefer if Nikon put back in the filter in the D810's successor (but I guess I'm in the minority). I tend to nowadays shoot with two approaches: one is to photograph people in available light with the lens wide open, where the aberrations reduce the risk of aliasing, and most of the image is out of focus which further limits the problem. However, sometimes gross aliasing occurs with the 20/1.8 wide open - it has enough depth of field wide open for shirt patterns to be incorrectly rendered. Black and white conversion is the destiny of such images in my case; suits the 20mm lens well since it's a great indoor available light lens. The 105/1.4 is annoying also, it is so sharp wide open that I get moire in hair and beards a lot - solution: do not use it with the D810. Mostly I shot with the 105/1.4 using the D5 and there is no problem; the most striking difference when using the D810 with this lens for the first time was the aliasing in hair. I use fast shutter speeds; a second technique to avoid moire and other aliasing phenomena is let the subject be blurred by a slightly too slow shutter speed.
The third approach is to use a tripod and shoot at around f/11 (in my case it is likely landscape, macro or architectural subject) and here the diffraction reduces the resolution of the lens sufficiently to avoid aliasing, and random subject detail structure also helps.
In the studio I use a camera which has the filter in place. I typically use the range f/5.6-f/11 for studio portraits (f/5.6 to f/8 for whole body; f/8 to f/11 for head and shoulders) and flash freeezes most of the movement so it's good to have the filter. Notice that Canon offers the 5Ds with the filter in place as well although it is with 50MP.
I think rather than rely software algorithms, most photographers can handle AA filterless cameras by using some of these techniques: (a) wide aperture which is aberration limited, (b) small aperture which is diffraction limited, (c) slower shutter speed which blurs the image sufficiently to avoid aliasing.