I agree that the lens is otherwise great, but...
I do not think that VR issues of this degree are acceptable, the VR is among the key features of this lens that are advertised by Nikon. Nikon claims 4.5 stops benefits over hand-holding. Therefore the high customer expectations are warranted. Issues to get any sharp results at all at 1/125s, which isn't even 2 stops under the usual hand-holding speed, are therefore not to be expected (I understand the issues with mirror slap etc that might be at play here, but it is the engineers' task to find solutions for this, or at least the issue should be made fully public such that customer expectations are set straight). Moreover, there are plenty of lenses that do not show the same issue (did anyone ever encounter these issues on a 300/2.8 VR I or II?).
When there is an issue with a product, advanced photographers (I'm not even that advanced IMHO) will quickly notice it. I expect Nikon to react with an attitude which is focused on solving the problem, rather than denying it. Unfortunately, it has often been the case with Nikon that problems are denied until pressure gets too high. I feel that this is getting better, but it crucially demands that customers who are not entirely satisfied give feedback to Nikon such that they realize how wide-spread a given problem is.