I had similar thoughts re the clip-in filters, Colin.
Apparently the focus offset is handled within the latitude of the focusing system of the camera, at least with the lenses tried so far. I'll add a few more longpass or narrow-pass filters before I conclude.
What I have seen is that my 400/4.5Z copes better with the clip-in filter than front-mounted filters, as the latter definitively can cause very uneven light field or even a hot spot. Impression so far is also the Fisheye Zoom 8-15mm f/3.5-4.5 likes rear filtration better (front filters are hardly feasible any way with this optic). Still collecting field data.