The AF error could be a common problem among the lenses using ultrasonic motors.
When I had my AF-S 50/1.8G calibrated at a Nikon service, the tech there told me that the USM would be mis-aligned over time, and then the focusing unit wouldn't stop at the position the camera want. That leads to the AF error which cannot be fully corrected by the in-camera focus micro-tune function. You need periodical re-calibration at the service.
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I think this is 'lost in translation' I believe he should have stated: A lens with usm or (swm in Nikon)
can become mis-aligned over time,,,
This is what is stated in all of the Nikon repair manuals, if you repair remove and reattach the F-mount or anything similar, you need to recalibrate the lens! All the details are given there if anyone cares to read them,,,
And yes if you want to make sure your lens is at it's top AF performance, you should do maintenance at the Nikon Service.
The ring-motor swm doesn't have a zero position as it has manual override that rotates part of the motor.
In all literature I have seen the same goes for the small-swm with th gearbox design - The repair manual refers to a certain distance the 'drive' has to move the lens croup, not from a zero position,,,
BTW It is believed (by reputable people) that Nikon has incorporated a compensation for focus shift now,,, Could explain why the new G type 1.4 lenses are so damn good at nailing focus,,,